Requirements

Genecoder molecular biology software is platform independent and only requires JavaTM 1.6 or later.

applewindowjava

Whats New

  • Multiple Sequence Alignment
  • Align Sanger Trace Files
  • Command line utilities

additional LINKs

Program Features

  • Sequence Database
  • Support for a large array of sequence file formats (default: Genbank)
  • Dynamic Restriction Site Analysis of DNA sequences
  • Editable Restriction Enzyme Library
  • Highlight, select, analyze, and save regions of interest
  • Create Linear and Circular Restriction Maps
  • Pairwise and multiple sequence alignments.
  • Plugin API to extend tools, views, and readable file formats.
  • Comprehensive preferences
  • Remote NCBI BLAST and Entrez Queries and downloads
  • View and analyze DNA sequence trace chromatagrams
  • Search for common sequences from an editable database of sequences
  • Analyze oligonucleotides for PCR and/or siRNA
  • And much more...

GeneCoder

GeneCoder is a freely available, comprehensive molecular biology software package for use in molecular cloning and sequence analysis of DNA and protein sequences.

Download GeneCoder

GeneCoder 4

Note: A new version of GeneCoder is currently in testing. Care to be a beta tester? Please contact contact Greg Cope for more information.

Features

Sequence display and restriction site analysis

Restriction Enzyme Analysis

  • Dynamic Restriction Site Lists.
  • Editable Restriction Enzyme Library.
  • Restriction Enzyme Digests.
  • Dynamic Restriction Maps.

Regions

  • Highlight regions of interest in DNA and protein sequences, and include these regions in graphic representations such as restriction maps.

Alignments

  • Pairwise alignments for both DNA and protein sequences.
  • Remote access to the NCBI BLAST server to perform comprehensive BLAST sequence analysis.
  • Search for common sequences from an editable database of sequences.
  • Align DNA sequences from multiple files and merge the alignements into a single sequence.
  • Align, merge, and compare multiple DNA sequences to a reference sequences.

Files

DNA Sequence trace display
  • Compatible with FASTA, Genbank, EMBL, ABI, DNA Strider, Text, and more...
  • View, analyze, and import DNA sequence chromatograms traces.
  • Export sequences as FASTA, plain text, Genbank, or EMBL file formats.

Oligo Tools

  • Calculate Oligonucleotide properties, including Melting Temperature, %GC content, and molecular mass.
  • Calculate potential oligonucleotide hairpins and annealing.
  • Create and analyze siRNA oligos.

Other Tools

  • Translate DNA sequences into a protein sequence by one phase or three phase.
  • Perform remote Entrez Sequence Queries and download DNA and protein sequences from NCBI.
  • Search for short sequences within a sequence file.

 


© 2008-2022 Greg Cope