Requirements
Genecoder molecular biology software is platform independent and only requires JavaTM 1.5 or later.
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GeneCoder
GeneCoder is a freely available, comprehensive molecular biology software package for use in molecular cloning and sequence analysis of DNA and protein sequences.
A new version of GeneCoder is currently in the works. Additions include Genbank default file format, Plug-in capability, recordable actions for automation, a new user interface, and open source. Care to contribute? Please contact contact Greg Cope for more information.
Features
Restriction Enzyme Analysis
- Dynamic Restriction Site Lists.
- Editable Restriction Enzyme Library.
- Restriction Enzyme Digests.
- Dynamic Restriction Maps.
Regions
- Highlight regions of interest in DNA and protein sequences, and include these regions in graphic representations such as restriction maps.
Alignments
- Pairwise alignments for both DNA and protein sequences.
- Remote access to the NCBI BLAST server to perform comprehensive BLAST sequence analysis.
- Search for common sequences from an editable database of sequences.
- Align DNA sequences from multiple files and merge the alignements into a single sequence.
- Align, merge, and compare multiple DNA sequences to a reference sequences.
Files
- Compatible with FASTA, Genbank, EMBL, ABI, DNA Strider, Text, and more...
- View, analyze, and import DNA sequence chromatograms traces.
- Export sequences as FASTA, plain text, Genbank, or EMBL file formats.
Oligo Tools
- Calculate Oligonucleotide properties, including Melting Temperature, %GC content, and molecular mass.
- Calculate potential oligonucleotide hairpins and annealing.
- Create and analyze siRNA oligos.
Other Tools
- Translate DNA sequences into a protein sequence by one phase or three phase.
- Perform remote Entrez Sequence Queries and download DNA and protein sequences from NCBI.
- Search for short sequences within a sequence file.