About

Use of GeneCoder requires the acceptance of the End User Software License to the left.

Requirements

Genecoder molecular biology software is platform independent and only requires JavaTM 1.6 or later.

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Whats New

  • Multiple Sequence Alignment
  • Align Sanger Trace Files
  • Command line utilities

Program Features

  • Sequence Database
  • Support for a large array of sequence file formats (default: Genbank)
  • Dynamic Restriction Site Analysis of DNA sequences
  • Editable Restriction Enzyme Library
  • Highlight, select, analyze, and save regions of interest
  • Create Linear and Circular Restriction Maps
  • Pairwise and multiple sequence alignments.
  • Plugin API to extend tools, views, and readable file formats.
  • Comprehensive preferences
  • Remote NCBI BLAST and Entrez Queries and downloads
  • View and analyze DNA sequence trace chromatagrams
  • Search for common sequences from an editable database of sequences
  • Analyze oligonucleotides for PCR and/or siRNA
  • And much more...

GeneCoder 4 License

GeneCoder is Software written and Designed by Greg Cope. GeneCoder software is free for non-commercial, scientific use. Users who wish to use the software for uses other than non-commercial scientific purposes must purchase a License to use GeneCoder through algosome.com. Please Contact us for more information.

By using GeneCoder, you the user must agree to the following Software License. It is important that you read carefully the following agreement.

1) Copyright and Trademark Notices:

Genecoder is Copyright � 2003-2012 Greg Cope. All Rights Reserved. Online support, documentation, illustrations, and trademarks are Copyright � 2003-2012 Greg Cope. All right reserved.

By using and/or distributing GeneCoder, you agree to the following:

END USER LICENSE: Greg Cope grants you a non-exclusive, non-transferable license to use its accompanying software product known as "GeneCoder 4.0" and any accompanying documentation provided by Greg Cope, anddocumentation are collectively referred to as the "Software" onthe following terms. You may use the software on any computer in your possession, provided the use of Genecoder is for non-commercial purposes.

YOU MAY NOT MODIFY OR OTHERWISE PREPARE DERIVATIVE WORKS OF THE SOFTWARE.

2. LIMITATIONS ON LICENSE. The license granted in Section 1 is subject to the following restrictions:

a. The Software is to be used only for scientific purposes unless you obtain Greg Cope's prior written consent. Prohibited purposes include, but are not limited to:

(i) Using, distributing, or copying the Software in a for-profit manner.

(ii) Licensing or renting the software to third parties for a fee (by payment of money or otherwise, whether direct or indirect).

(iii) Using the software in a for profit manner without the purchase of a software license, including but not limited to use in scientific research towards a for profit goal.

b. You shall use your best efforts to promptly notify Greg Cope upon learning of any violation of the above restrictions.

c. On each copy of the Software you must conspicuously and appropriately reproduce Greg Cope's copyright notices (see Software for examples of such notices) and disclaimer of warranty; keep intact this Agreement and all notices that refer to this Agreement or any absence of warranty (whether written or interactively displayed); and give any other recipients of the Software a copy of this Agreement.

d. You may not modify or otherwise prepare derivative works of the Software, or distribute the software without prior permission by Greg Cope and/or Algosome.

e. In order to preserve the value of the Cope Software name and/or any trademarks, service marks, trade dress adopted and/or used by Greg Cope[from time to time, you shall not make use of any of them for any reason (e.g., with respect to an Additional File, in advertising, marketing your own products, press releases, or other publicity) except solely as may be expressly authorized by this Agreement or by the prior written consent of Greg Cope.

f. Greg Cope, in his sole and absolute discretion, may have included a portion of the source code or online documentation of the Software. Except for any such portions, you shall not REVERSE ENGINEER, DECOMPILE, DISASSEMBLE, OR OTHERWISE REDUCE ANY PORTION OF THE SOFTWARE TO ANY HUMAN PERCEIVABLE FORM, except to the extent this restriction is prohibited by applicable law.

3. DISTRIBUTION: As used in this Agreement, the term "distribute" (and its variants) includes making the Software available (either intentionally or unintentionally) to third parties for copying or use, including providing timeshare access. Distribution of the software in a non-profit or for-profit manner is not permissible without express written consent of Greg Cope and/or Algosome.

4. TITLE. Title, ownership rights, and intellectual property rights in and to the Software, and each copy thereof (including all copyrights therein), shall remain to Greg Cope. The Software is protected by the copyright laws of the United States and international copyright treaties.

5. NO OBLIGATION. You are solely responsible for all of your costs and expenses incurred in connection with the use of the Software, and Greg Cope shall have no liability, obligation or responsibility therefor. Greg Cope shall have no obligation to provide maintenance, support, upgrades or new releases to you of the Software.

6. NO WARRANTY. THE SOFTWARE IS LICENSED FREE OF CHARGE, AND THERE IS NO WARRANTY FOR THE SOFTWARE. Greg Cope PROVIDES THE SOFTWARE "AS IS," AND GREG COPE, his DISTRIBUTORS AND SUPPLIERS, AND ALL OTHER PERSONS WHO HAVE BEEN INVOLVED IN THE CREATION, PRODUCTION, OR DELIVERY OF THE SOFTWARE, DISCLAIM ALL CONDITIONS AND WARRANTIES OF ANY KIND, EITHER EXPRESS, IMPLIED, STATUTORY, OR OTHERWISE, INCLUDING, BUT NOT LIMITED TO, ANY CONDITIONS OR IMPLIED WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE RESULTS, QUALITY AND PERFORMANCE OF THE SOFTWARE IS WITH YOU. SHOULD THE SOFTWARE PROVE DEFECTIVE, YOU (AND NOT GREG COPE) ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. GREG COPE MAKES NO WARRANTY OF NONINFRINGEMENT OF THE INTELLECTUAL PROPERTY RIGHTS OF THIRD PARTIES.

7. LIMITATION OF LIABILITY. UNDER NO CIRCUMSTANCES AND UNDER NO LEGAL THEORY, TORT, CONTRACT, OR OTHERWISE, SHALL GREG COPE, HIS DISTRIBUTORS AND SUPPLIERS, OR ANY OTHER PERSON WHO HAS BEEN INVOLVED IN THE CREATION, PRODUCTION, OR DELIVERY OF THE SOFTWARE BE LIABLE TO YOU OR ANY OTHER PERSON FOR ANY GENERAL, DIRECT, INDIRECT, SPECIAL, INCIDENTAL, CONSEQUENTIAL, OR OTHER DAMAGES OF ANY CHARACTER ARISING OUT OF THIS AGREEMENT OR THE USE OR INABILITY TO USE THE SOFTWARE, INCLUDING BUT NOT LIMITED TO PERSONAL INJURY, LOSS OF PROFITS, LOSS OF DATA, OUTPUT FROM THE SOFTWARE OR DATA BEING RENDERED INACCURATE, FAILURE OF THE SOFTWARE TO OPERATE WITH ANY OTHER PROGRAMS, DAMAGES FOR LOSS OF GOODWILL, BUSINESS INTERRUPTION, COMPUTER FAILURE OR MALFUNCTION, OR ANY AND ALL OTHER DAMAGES OR LOSSES OF WHATEVER NATURE, EVEN IF GREG COPE HAS BEEN INFORMED OF THE POSSIBILITY OF SUCH DAMAGES.

8. INDEMNIFICATION. You and/or your organization shall defend, indemnify and hold harmless Greg Cope, his distributors and suppliers, and all other persons who have been involved in the creation, production, or delivery of the Software, from any claim, demand, liability, damage award, suit, judgment, or other legal action (including reasonable attorney's fees) arising out of your use of the software.

9. TERMINATION. The license granted hereunder is effective until terminated by Greg Cope. You may terminate it at any time by destroying the Software. This license will terminate automatically if you fail to comply with the limitations described above. On termination, you must immediately destroy all copies of the Software.

10. EXPORT CONTROLS. None of the Software or underlying information or technology may be downloaded or otherwise exported or re-exported into (or to a national or resident of) any country in violation of the laws and administrative regulations of the United States relating to the control of exports of commodities and technical data. By downloading or using the Software, you are agreeing to the foregoing and you are representing and warranting that you are not located in, under the control of, or a national or resident of any such country.

11. U. S. GOVERNMENT USE. The Software and any accompanying documentation are deemed to be "commercial computer software" and "commercial computer software documentation," respectively, pursuant to DFAR Section 227.7202 and FAR Section 12.212, as applicable. Any use, modification, reproduction, release, performing, displaying or disclosing of the Software and accompanying documentation by the U.S. Government shall be governed solely by the terms of this Agreement and shall be prohibited except to the extent expressly permitted by the terms of this Agreement.

12. MISCELLANEOUS. This Agreement represents the complete agreement concerning this license between the parties and supersedes all prior agreements and representations between them. It may not be amended. If any provision of this Agreement is held to be unenforceable for any reason, this Agreement shall terminate. This Agreement shall be governed by and construed under California law as such law applies to agreements between California residents entered into and to be performed within California, except as governed by U.S. federal law. The application of the United Nations Convention on Contracts for the International Sale of Goods is expressly excluded. Address all correspondence regarding this license to: gregcope@algosome.com

ATTENTION: READ CAREFULLY! By using, copying, or distributing the accompanying software you indicate your acceptance of the above End User License Agreement.


© 2008-2022 Greg Cope